Due to a Catia limitation, the "3D Clipping View" function from the "Drafting" workbench is not compatible with the "Do not cut in section views" options, which are in the "Drafting" tabs of the 3D properties or in the "Overload Properties" on the 2D view.

If you want to study alternatives, please check the document below with explanations. 

 "Clipping View" function alternatives